PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr004384.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family Trihelix
Protein Properties Length: 361aa    MW: 40638.7 Da    PI: 8.9349
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr004384.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix95.84e-30231323186
     trihelix   1 rWtkqevlaLiearremeerlrrgk........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                  rW+++evlaLi++r ++ ++ + g          k+plWe++s+ m e g++rs+k+Ckekwen+nk+++k+k+ +kkr s +s+tcpyf+ql 
  Pbr004384.1 231 RWPRDEVLALINLRCSLFNNGGGGDqdkdggvvMKAPLWERISQGMLEMGYTRSAKRCKEKWENINKYFRKTKDVNKKR-SLDSRTCPYFHQLS 323
                  8**************999999976556678888*********************************************8.9999********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138376.5E-18230324No hitNo description
CDDcd122031.37E-21230303No hitNo description
PROSITE profilePS500906.353231296IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0001158Molecular Functionenhancer sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MLNPEEHNEK EVVVETRPKN NTKKRKRQRK FEMLKGFCED IVNRMMARQE AMHNKLLEEM  60
VKRNEEKLAR EEAWKKQETD RMNKELEIMA REQAVAGDRQ ATVIKFLKKF TSSSSNSSTS  120
TSSFPIQAQK PNRPTCNDVS GRKELDHHQE KENNPTTPSS LTESTLAPQS PSSSALAPTP  180
IAVPTMTILS RATAAAAVVV APPENPSSDD VIINTQNPSS ISHDKQDLGK RWPRDEVLAL  240
INLRCSLFNN GGGGDQDKDG GVVMKAPLWE RISQGMLEMG YTRSAKRCKE KWENINKYFR  300
KTKDVNKKRS LDSRTCPYFH QLSSLYNQGI LVPPSDHAPE DRPTSPENHS LGDDDSTKHD  360
*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11725PKNNTKKRK
22328KRKRQR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00011PBMTransfer from AT5G28300Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009364525.10.0PREDICTED: LOW QUALITY PROTEIN: trihelix transcription factor GTL2
TrEMBLM5W7S81e-143M5W7S8_PRUPE; Uncharacterized protein
STRINGVIT_14s0030g01860.t011e-107(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50433355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28300.12e-44Trihelix family protein